Auto Up Operation does not Fully Close Power Window (Jam Protection Function is Activated) [08/2013 - ]: Description
WARNING: This page is about a different car, the 2014 Lexus ES 300h. However, it is still accessible from the selected car via links, so may be relevant.
If a door glass or a power window regulator motor assembly does not operate smoothly, the jam protection function may be triggered automatically, resulting in the auto up operation being unable to fully close the window.
HINT:
This symptom may occur for any of the windows.